#include <stdio.h>
#include <string>
#include "Funz_C.h"
#include "E_Coli.h"
#include "LoadBar.hpp"

Functions
int	Stima_tempo (int n_c, int n_val_termine, int &j_cel_finale, int &j_cel_inizio, time_t timer1)

int	initial_position (int j, double x, double x0, double Raggio, int num_dist, int &cont_dist_5, int delta_dist_cont, double Delta_delta_dist)

void	timestamp ()

void	funz_clear ()

int	simulation_2 (E_coli batterio, double T_f, Funz_C f, double x0, double dt, int n_c, double Raggio, int delta_dist, int num_dist, int const_salv, std::string names_files_Ecoli_mod, std::string names_indice_mod, std::string names_files_tau_mod, std::string names_file_dyn_mod, std::string names_info_mod, int n_sim, int cont_gen_sim, int tot_bacteria, int n_thread=1)

void	startThreadSimulation (E_coli batterio, double T_f, Funz_C f, array< double, 2 > x0, double dt, int n_c, double Raggio, int delta_dist, int num_dist, int const_salv, string names_files_Ecoli_mod, string names_indice_mod, string names_files_tau_mod, string names_file_dyn_mod, string *names_info_mod, int n_sim, int cont_gen_sim, int n_thread, int &dim_colonne)

string	setNametempFiles (string name, int n_thread)
	set the name of the temporary files ... More...

int	simulation_2MultiT (E_coli batterio, double T_f, Funz_C f, double x0, double dt, int n_c, double Raggio, int delta_dist, int num_dist, int const_salv, string names_files_Ecoli_mod, string names_indice_mod, string names_files_tau_mod, string names_file_dyn_mod, string names_info_mod, int n_sim, int cont_gen_sim, int n_thread)
	Function that performs the actual simulation of independent population. More...

void	makeDuplicate (E_coli batterio, vector< E_coli > &batterioCopy, Funz_C f, vector< Funz_C > &fCopy, int n_thread)
	This function create a duplicate of the base bacterium and f_c: More...

int	mergeFilesSimulation (int n_thread, string names_files_Ecoli_mod, string names_indice_mod, string names_files_tau_mod, string names_file_dyn_mod)
	This function merges the files together. More...

Function Documentation

void funz_clear ( )

This function clear the terminal (different command according to the system)

int initial_position	(	int	j,
		double *	x,
		double *	x0,
		double	Raggio,
		int	num_dist,
		int &	cont_dist_5,
		int	delta_dist_cont,
		double	Delta_delta_dist
	)

This function set the initial position. What it does is: if the distribution is the n. 5, then update the new center, otherwise it calls dist_iniz(x,x0,Raggio,num_dist).

Parameters

x[]	position of pacterium (to be set)
x0[]	initial position, set in the menu
R	radius distribution
type	of distribution, see menu

Returns: if the initial position change return 1, otherwise 0. If the position didn't change the initial condition for this bacterium are the same as the previous one, so we don't have to perform initial-condition calculation.

void makeDuplicate	(	E_coli *	batterio,
		vector< E_coli * > &	batterioCopy,
		Funz_C *	f,
		vector< Funz_C * > &	fCopy,
		int	n_thread
	)

This function create a duplicate of the base bacterium and f_c:

int mergeFilesSimulation	(	int	n_thread,
		string *	names_files_Ecoli_mod,
		string	names_indice_mod,
		string *	names_files_tau_mod,
		string	names_file_dyn_mod
	)

This function merges the files together.

string setNametempFiles	(	string	name,
		int	n_thread
	)

set the name of the temporary files ...

int simulation_2	(	E_coli *	batterio,
		double	T_f,
		Funz_C *	f,
		double *	x0,
		double	dt,
		int	n_c,
		double	Raggio,
		int	delta_dist,
		int	num_dist,
		int	const_salv,
		std::string *	names_files_Ecoli_mod,
		std::string	names_indice_mod,
		std::string *	names_files_tau_mod,
		std::string	names_file_dyn_mod,
		std::string *	names_info_mod,
		int	n_sim,
		int	cont_gen_sim,
		int	tot_bacteria,
		int	n_thread = `1`
	)

int simulation_2MultiT	(	E_coli *	batterio,
		double	T_f,
		Funz_C *	f,
		double *	x0,
		double	dt,
		int	n_c,
		double	Raggio,
		int	delta_dist,
		int	num_dist,
		int	const_salv,
		string *	names_files_Ecoli_mod,
		string	names_indice_mod,
		string *	names_files_tau_mod,
		string	names_file_dyn_mod,
		string *	names_info_mod,
		int	n_sim,
		int	cont_gen_sim,
		int	n_thread
	)

Function that performs the actual simulation of independent population.

void startThreadSimulation	(	E_coli *	batterio,
		double	T_f,
		Funz_C *	f,
		array< double, 2 >	x0,
		double	dt,
		int	n_c,
		double	Raggio,
		int	delta_dist,
		int	num_dist,
		int	const_salv,
		string *	names_files_Ecoli_mod,
		string	names_indice_mod,
		string *	names_files_tau_mod,
		string	names_file_dyn_mod,
		string *	names_info_mod,
		int	n_sim,
		int	cont_gen_sim,
		int	n_thread,
		int &	dim_line_save
	)

start a thread of simulation.

int Stima_tempo	(	int	n_c,
		int	n_val_termine,
		int &	j_cel_finale,
		int &	j_cel_inizio,
		time_t	timer1
	)

This function extimate the time to finish the simulation

void timestamp ( )

Functions

Function Documentation