simulation_2MultiT.cpp File Reference

#include <iostream>
#include <vector>
#include <fstream>
#include <cmath>
#include <sstream>
#include <thread>
#include <system_error>
#include <sys/stat.h>
#include "GlobalVariables.h"
#include <cstring>
#include "simulation_2MultiT.hpp"
#include <unistd.h>
#include "CV_rExp_tExp.h"
#include "CV_rIG_tExp.h"
#include "CV_rExpIG_tExp.h"
#include "EO_rExp_tExp.h"
#include "EO_rIG_tExp.h"
#include "EO_rExpIG_tExp.h"
#include "Molecular_rExp_tExp.h"
#include "Molecular_rExpIG_tExp.h"
#include "Molecular_rIG_tExp.h"
#include "ParameterEstimation_CV_rExp_tExp.h"
#include "ParameterEstimation_CV_rIG_tExp.h"
#include "GlobalRandomVariables.h"
#include "constants.h"

Macros
#define	max(a, b)   ( ((a) > (b)) ? (a) : (b) )
#define	min(a, b)   ( ((a) < (b)) ? (a) : (b) )
#define	n_val_termine   200

Functions
int	simulation_2MultiT (E_coli *batterio, double T_f, Funz_C *f, double *x0, double dt, int n_c, double Raggio, int delta_dist, int num_dist, int const_salv, string *names_files_Ecoli_mod, string names_indice_mod, string *names_files_tau_mod, string names_file_dyn_mod, string *names_info_mod, int n_sim, int cont_gen_sim, int n_thread)
	Function that performs the actual simulation of independent population. More...
string	setNametempFiles (string name, int n_thread)
	set the name of the temporary files ... More...
void	startThreadSimulation (E_coli *batterio, double T_f, Funz_C *f, array< double, 2 > x0, double dt, int n_c, double Raggio, int delta_dist, int num_dist, int const_salv, string *names_files_Ecoli_mod, string names_indice_mod, string *names_files_tau_mod, string names_file_dyn_mod, string *names_info_mod, int n_sim, int cont_gen_sim, int n_thread, int &dim_line_save)
void	makeDuplicate (E_coli *batterio, vector< E_coli * > &batterioCopy, Funz_C *f, vector< Funz_C * > &fCopy, int n_thread)
	This function create a duplicate of the base bacterium and f_c: More...
int	mergeFilesSimulation (int n_thread, string *names_files_Ecoli_mod, string names_indice_mod, string *names_files_tau_mod, string names_file_dyn_mod)
	This function merges the files together. More...

Macro Definition Documentation

#define max	(		a,
			b
	)		( ((a) > (b)) ? (a) : (b) )

#define min	(		a,
			b
	)		( ((a) < (b)) ? (a) : (b) )

#define n_val_termine   200

Function Documentation

void makeDuplicate	(	E_coli *	batterio,
		vector< E_coli * > &	batterioCopy,
		Funz_C *	f,
		vector< Funz_C * > &	fCopy,
		int	n_thread
	)

This function create a duplicate of the base bacterium and f_c:

int mergeFilesSimulation	(	int	n_thread,
		string *	names_files_Ecoli_mod,
		string	names_indice_mod,
		string *	names_files_tau_mod,
		string	names_file_dyn_mod
	)

This function merges the files together.

string setNametempFiles	(	string	name,
		int	n_thread
	)

set the name of the temporary files ...

int simulation_2MultiT	(	E_coli *	batterio,
		double	T_f,
		Funz_C *	f,
		double *	x0,
		double	dt,
		int	n_c,
		double	Raggio,
		int	delta_dist,
		int	num_dist,
		int	const_salv,
		string *	names_files_Ecoli_mod,
		string	names_indice_mod,
		string *	names_files_tau_mod,
		string	names_file_dyn_mod,
		string *	names_info_mod,
		int	n_sim,
		int	cont_gen_sim,
		int	n_thread
	)

Function that performs the actual simulation of independent population.

void startThreadSimulation	(	E_coli *	batterio,
		double	T_f,
		Funz_C *	f,
		array< double, 2 >	x0,
		double	dt,
		int	n_c,
		double	Raggio,
		int	delta_dist,
		int	num_dist,
		int	const_salv,
		string *	names_files_Ecoli_mod,
		string	names_indice_mod,
		string *	names_files_tau_mod,
		string	names_file_dyn_mod,
		string *	names_info_mod,
		int	n_sim,
		int	cont_gen_sim,
		int	n_thread,
		int &	dim_line_save
	)

start a thread of simulation.