simulation_2.cpp File Reference

#include <iostream>
#include <vector>
#include <fstream>
#include <cmath>
#include <sstream>
#include <ctime>
#include <thread>
#include <cstring>
#include "Funz_C.h"
#include "Funz_C_Par.h"
#include "E_Coli.h"
#include "ParameterEstimation_E_Coli.h"
#include "CV_rExp_tExp.h"
#include "GlobalVariables.h"
#include "GlobalRandomVariables.h"
#include "LoadBar.hpp"
#include "constants.h"

Macros
#define	max(a, b)   ( ((a) > (b)) ? (a) : (b) )
#define	min(a, b)   ( ((a) < (b)) ? (a) : (b) )
#define	n_val_termine   200

Functions
int	Stima_tempo (int n_c, int n_val_termine, int &j_cel_finale, int &j_cel_inizio, time_t timer1)
int	initial_position (int j, double *x, double *x0, double Raggio, int num_dist, int &cont_dist_5, int delta_dist_cont, double Delta_delta_dist)
void	timestamp ()
void	funz_clearAll ()
void	loadbar (unsigned int x, unsigned int n, int time_, unsigned int w)
void	funz_clear ()
int	simulation_2 (E_coli *batterio, double T_f, Funz_C *f, double *x_0, double dt, int n_c, double Raggio, int delta_dist, int num_dist, int const_salv, string *names_files_Ecoli_mod, string names_indice_mod, string *names_files_tau_mod, string names_file_dyn_mod, string *names_info_mod, int n_sim, int cont_gen_sim, int tot_bacteria, int n_thread)

Macro Definition Documentation

#define max	(		a,
			b
	)		( ((a) > (b)) ? (a) : (b) )

#define min	(		a,
			b
	)		( ((a) < (b)) ? (a) : (b) )

#define n_val_termine   200

Function Documentation

void funz_clear

(

)

This function clear the terminal (different command according to the system)

void funz_clearAll

(

)

int initial_position	(	int	j,
		double *	x,
		double *	x0,
		double	Raggio,
		int	num_dist,
		int &	cont_dist_5,
		int	delta_dist_cont,
		double	Delta_delta_dist
	)

This function set the initial position. What it does is: if the distribution is the n. 5, then update the new center, otherwise it calls dist_iniz(x,x0,Raggio,num_dist).

Parameters

x[]	position of pacterium (to be set)
x0[]	initial position, set in the menu
R	radius distribution
type	of distribution, see menu

Returns

if the initial position change return 1, otherwise 0. If the position didn't change the initial condition for this bacterium are the same as the previous one, so we don't have to perform initial-condition calculation.

void loadbar	(	unsigned int	x,
		unsigned int	n,
		int	time_,
		unsigned int	w
	)

int simulation_2	(	E_coli *	batterio,
		double	T_f,
		Funz_C *	f,
		double *	x_0,
		double	dt,
		int	n_c,
		double	Raggio,
		int	delta_dist,
		int	num_dist,
		int	const_salv,
		string *	names_files_Ecoli_mod,
		string	names_indice_mod,
		string *	names_files_tau_mod,
		string	names_file_dyn_mod,
		string *	names_info_mod,
		int	n_sim,
		int	cont_gen_sim,
		int	tot_bacteria,
		int	n_thread
	)

Function that performs the actual simulation of independent population

int Stima_tempo	(	int	n_c,
		int	n_val_termine,
		int &	j_cel_finale,
		int &	j_cel_inizio,
		time_t	timer1
	)

This function extimate the time to finish the simulation

void timestamp

(

)