#include <iostream>
#include "E_Coli.h"
#include "ParameterEstimation_E_Coli.h"
#include "CV_rExp_tExp.h"
#include "CV_rIG_tExp.h"
#include "CV_rExpIG_tExp.h"
#include "EO_rExp_tExp.h"
#include "EO_rIG_tExp.h"
#include "EO_rExpIG_tExp.h"
#include "Molecular_rExp_tExp.h"
#include "Molecular_rIG_tExp.h"
#include "Molecular_rExpIG_tExp.h"
#include <vector>
#include "Colori.h"
#include "sssr.h"

Functions
void	funz_clear ()

void	timestamp ()

void	setParametersModelBacteriumInteracting (E_coli *batterio, int cont_gen_sim)

int	writeLog (string what, string msg)
	this function write to the Log file. More...

int	Set_Stocasticita (vector< int > &which_compare, int statisticita)

void	create_bacteria_vector (vector< E_coli * > &batteri)

void	initialization_interacting_population (int tipo_simulazione, vector< E_coli * > *batteri_int, int n_c, int cont_gen_sim)

Function Documentation

void create_bacteria_vector ( vector< E_coli * > & batteri )

for the non population interacting with the ligand it is enough one rappresentant. This file has to be modified if you add a new model add the right index as in int Set_Stocasticita(vector<int> &which_compare ,int statisticita)

void funz_clear ( )

This function clear the terminal (different command according to the system)

void initialization_interacting_population	(	int	tipo_simulazione,
		vector< E_coli * > *	batteri_int,
		int	n_c,
		int	cont_gen_sim
	)

This file has to be modified if you add a new model like in void create_bacteria_vector(vector<E_coli*> &batteri) but we have to create a vector of number of population bacteria, since they interact with each other. Note that they have all defaoult parameters, a part from the production rate a static variable for E_coli class

Parameters

tipo_simulazione	model
batteri_int	pointer to the population of bacteria
n_c	number bacteria

int Set_Stocasticita	(	vector< int > &	which_compare,
		int	statisticita
	)

This file has to be modified if you add a new model: the local variable n_sim keep the number of all model. You have to update it set the model/s you want to simulate.

Parameters

which_compare	vector of the model to compare
statisticita	= 1, statistical fitting, else simulation

Returns: number of simulation to perform with the "same envarioment setting" (func c, initial position and so on)

void setParametersModelBacteriumInteracting	(	E_coli *	batterio,
		int	cont_gen_sim
	)

void timestamp ( )

int writeLog	(	string	what,
		string	msg
	)

this function write to the Log file.

Functions

Function Documentation