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EcoliSimulator
2.0.1a
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EcoliSimulator
2.0.1a
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This is the complete list of members for Molecular_rExp_tExp, including all inherited members.
| a | Molecular_rExp_tExp | protected |
| a_m | Molecular_rExp_tExp | protected |
| A_max | Molecular_rExp_tExp | protected |
| agg_dyint(double dt, double t) | Molecular_rExp_tExp | virtual |
| agg_dyn(double dt, double t) | Molecular_rExp_tExp | virtual |
| agg_ligand(double t, Funz_C *f) | E_coli | |
| aggiornamento(double dt, double t, Funz_C *f, int &sign_p, ofstream *file_tau, std::ofstream &file_theta) | E_coli | |
| barriera_r | E_coli | protected |
| barriera_t | E_coli | protected |
| C() | E_coli | |
| c | E_coli | protected |
| c_iniziale | E_coli | protected |
| C_iniziale() | E_coli | |
| change_molecular() | Molecular_rExp_tExp | |
| change_par(int change) | Molecular_rExp_tExp | virtual |
| codice_batterio | E_coli | |
| D_theta | E_coli | protected |
| debugFunction() | E_coli | virtual |
| deltaW_ec(double dt) | E_coli | protected |
| dist_iniz_ec(std::array< double, 2 > x0, double R, unsigned int num_dist) | E_coli | |
| distribution_I_r | ParameterEstimation_E_coli | protected |
| distribution_I_t | ParameterEstimation_E_coli | protected |
| E_coli() | E_coli | |
| E_coli(const E_coli &modello) | E_coli | |
| engine_altro | E_coli | |
| engine_barrier | E_coli | |
| engine_theta | E_coli | |
| Exp_dist_ec() | E_coli | protected |
| F_CSV(Molecular_rExp_tExp *batterio, double m_s, double L_use) | Molecular_rExp_tExp | friend |
| F_RC_0() | E_coli | |
| F_RC_1() | E_coli | |
| F_RC_q() | E_coli | |
| F_tipo_response_c() | E_coli | |
| factor_prob | Molecular_rExp_tExp | protected |
| gamma_par_double_ec() | E_coli | protected |
| Get_RC_0(double Rc0) | E_coli | |
| Get_RC_1(double Rc1) | E_coli | |
| Get_RC_q(int Rcq) | E_coli | |
| Get_tipo_response_c(int T_r) | E_coli | |
| gnuplot_response(std::string names_info_mod, int save_, int con_gen_sim) | E_coli | virtual |
| gnuplot_single(string *names_files_Ecoli_mod, string &names_indice_mod, string *names_files_tau_mod, string &names_file_dyn_mod, string *names_info_mod, double T_f, Funz_C *f, int save_, int con_gen_sim) | Molecular_rExp_tExp | |
| ParameterEstimation_E_coli::gnuplot_single(std::string *names_files_Ecoli_mod, std::string &names_indice_mod, std::string *names_files_tau_mod, std::string &names_file_dyn_mod, std::string *names_info_mod, double T_f, Funz_C *f, int save_, int con_gen_sim) | E_coli | virtual |
| gnuplot_single_film(std::string *names_files_Ecoli_mod, std::string &names_indice_mod, std::string *names_files_tau_mod, std::string &names_file_dyn_mod, std::string *names_info_mod, double T_f, Funz_C *f, int cont_sim) | E_coli | virtual |
| gnuplot_single_film_gif(std::string *names_files_Ecoli_mod, std::string &names_indice_mod, std::string *names_files_tau_mod, std::string &names_file_dyn_mod, std::string *names_info_mod, double T_f, Funz_C *f, int cont_sim) | E_coli | virtual |
| gnuplotFunzInternalDynalmic(std::string buffer, int save_, int con_gen_sim) | E_coli | virtual |
| GoodFit | ParameterEstimation_E_coli | protected |
| H | Molecular_rExp_tExp | protected |
| I_tau_r | ParameterEstimation_E_coli | protected |
| I_tau_t | ParameterEstimation_E_coli | protected |
| initial_position_ec(int j, std::array< double, 2 > x0, double Raggio, int num_dist, int &cont_dist_5, int delta_dist_cont, double Delta_delta_dist) | E_coli | |
| k_a | Molecular_rExp_tExp | protected |
| K_B | Molecular_rExp_tExp | protected |
| K_off | Molecular_rExp_tExp | protected |
| K_on | Molecular_rExp_tExp | protected |
| K_R | Molecular_rExp_tExp | protected |
| k_z | Molecular_rExp_tExp | protected |
| kCheB | Molecular_rExp_tExp | protected |
| kCheR | Molecular_rExp_tExp | protected |
| KS_D_n | ParameterEstimation_E_coli | protected |
| KS_L1 | ParameterEstimation_E_coli | protected |
| L_max | Molecular_rExp_tExp | protected |
| lambda_r | E_coli | protected |
| lambda_t | E_coli | protected |
| m_0 | Molecular_rExp_tExp | protected |
| M_max | Molecular_rExp_tExp | protected |
| meth | Molecular_rExp_tExp | protected |
| Molecular_rExp_tExp() | Molecular_rExp_tExp | |
| Molecular_rExp_tExp(const Molecular_rExp_tExp &modello) | Molecular_rExp_tExp | |
| n_a | Molecular_rExp_tExp | protected |
| N_dyn_var() | E_coli | |
| n_dyn_var | E_coli | protected |
| newtheta_ec(double theta) | E_coli | protected |
| p_r | Molecular_rExp_tExp | protected |
| ParameterEstimation_E_coli() | ParameterEstimation_E_coli | |
| ParameterEstimation_E_coli(const E_coli &modello) | ParameterEstimation_E_coli | |
| print_info(std::ofstream &file_save) | Molecular_rExp_tExp | virtual |
| produce(Funz_C *f_i, double dt) | E_coli | virtual |
| production_rate | E_coli | protected |
| Production_rate() | E_coli | |
| rand_normal_ec(double stddev) | E_coli | protected |
| RC_0 | E_coli | protected |
| RC_1 | E_coli | protected |
| RC_q | E_coli | protected |
| reset_barrier() | E_coli | virtual |
| reset_barrier_t() | E_coli | virtual |
| reset_par() | Molecular_rExp_tExp | virtual |
| response_function() | E_coli | |
| s_F_lambda_r(vector< Q_tau_stat > vector_lambda, int n_vect) | ParameterEstimation_E_coli | |
| E_coli::s_F_lambda_r(std::vector< Q_tau_stat > vector_lambda, int n_vect) | E_coli | virtual |
| s_lambda_r | E_coli | |
| s_lambda_t | ParameterEstimation_E_coli | protected |
| salto_ | E_coli | protected |
| save_dyn(std::ofstream &file_, double t) | Molecular_rExp_tExp | |
| ParameterEstimation_E_coli::save_dyn(ofstream &file, double t) | E_coli | virtual |
| save_E_coli(ofstream *file, double t) | E_coli | |
| save_E_coli_initial(std::ofstream *file_, double t) | E_coli | |
| save_run(double t, ofstream &file_salto, double dt) | E_coli | |
| save_theta(double t, double theta, std::ofstream &file_run) | E_coli | |
| save_tumble(double t, ofstream &file_tumble, double dt) | E_coli | |
| saveIntDyn(std::string nameFile) | E_coli | virtual |
| seed_ecoli | E_coli | protected |
| set_GoodnessFit(int Good, double D_n, double cumD_n) | ParameterEstimation_E_coli | virtual |
| set_response(int ftipo_response_c, double fRC_0, double fRC_1, int fRC_q) | E_coli | |
| setEngine_ec(std::mt19937_64 *engine_thread_theta, std::mt19937_64 *engine_thread_bar, std::mt19937_64 *engine_thread_altro) | E_coli | protected |
| setProductionRate(double _prodRate) | E_coli | |
| setSeed_ec(unsigned int *seed_thread) | E_coli | protected |
| sign_c | E_coli | protected |
| simulation | E_coli | |
| start_simulation(Funz_C *f) | E_coli | |
| statF_lambda_r(s_lambda &vector_lambda) | E_coli | |
| stationary_dyn(double dt, std::vector< double > &m0, int changed_pos) | Molecular_rExp_tExp | virtual |
| t_r | E_coli | protected |
| t_t | E_coli | protected |
| tau_r | E_coli | protected |
| tau_t | E_coli | protected |
| Tau_t(double tt_) | E_coli | |
| theta | E_coli | protected |
| Tipo_batterio | E_coli | |
| tipo_response_c | E_coli | protected |
| tipoNewTheta | E_coli | protected |
| unifRand_ec() | E_coli | protected |
| up_down | E_coli | protected |
| V() | E_coli | inline |
| v | E_coli | protected |
| writeScriptgnuplotSingle(string tipo, string *names_files_Ecoli_mod, string *names_files_tau_mod, string *names_info_mod, string &names_file_dyn_mod, double T_f, int con_gen_sim, int save_) | Molecular_rExp_tExp | protected |
| ParameterEstimation_E_coli::writeScriptgnuplotSingle(std::string tipo, std::string *names_files_Ecoli_mod, std::string *names_files_tau_mod, std::string *names_info_mod, std::string &names_file_dyn_mod, double T_f, int con_gen_sim, int save_) | E_coli | protectedvirtual |
| writeScriptLunchgnuplotSingle(std::string tipo, int save_, int con_gen_sim) | E_coli | protectedvirtual |
| x | E_coli | protected |
| X() | E_coli | |
| y | Molecular_rExp_tExp | protected |
| y_0 | Molecular_rExp_tExp | protected |
| y_max | Molecular_rExp_tExp | protected |
1.8.11 
